Bioinformatics Scientist

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:,ActualValueFromSolar:null},{QuestionName:Job Summary,AnswerValue:JOB OVERVIEWu003cbr/u003eThe UCSF Genomics CoLab and Liver Center seek a Bioinformatics Scientist who is interested in applying his/her expertise to biomedical research with an emphasis on liver biology and disease. The candidate will reside within a multidisciplinary group of data scientists where s/he will receive direct supervision.u003cbr/u003eu003cbr/u003eIn this team environment, the Bioinformatics Scientist will perform statistical analyses of high-throughput genomics data by using and/or adapting existing computational pipelines and algorithms. The candidate will learn to write code to process genomic data sets, generate reports, and present the results to collaborators. The collaborators, in turn, will provide biologic context to the data sets, which will enable the candidate to develop unique biomedical expertise. With supervision, s/he will work from standard analysis pipelines and learn to modify code to fit individual projects. S/he will interact closely with CoLab members and collaborate with other bioinformaticians doing similar work at UCSF and elsewhere. u003cbr/u003eu003cbr/u003eTHE COLABSu003cbr/u003eThe CoLabs are a collection of integrated laboratories specializing in infrastructure or technologies. It seeks to revitalize the model for core resources by capitalizing on critical personnel and cutting-edge technologies, and driving collaboration across disciplines. The model will house all CoLabs teams in a contiguous space and create a set of common pipelines and workflows in one centralized locale. It will recruit and retain world-class staff through project engagement, backstopped “tenure,” and annual operational funds. It will develop and invest in transformative methods and technologies.u003cbr/u003e u003cbr/u003eIn its current form, the CoLabs consolidate three existing groups, Genomics, Flow Cytometry, and Biological Imaging Development (BIDC), and establish two new ones, Disease to Biology (D2B) and Data Science (DS), placing them all under one roof. The CoLabs will help organize and integrate the UCSF community through common pipelines and data curation around a set of collaborative “CoProjects” that will tackle fundamental questions in the field. While CoProjects are investigator-driven, the day-to-day operations must be managed and run through the cutting-edge CoLabs, which house world-class staff and technologies.u003cbr/u003eu003cbr/u003eGENOMICS COLABu003cbr/u003eThe Genomics CoLab serves as an innovative hub of molecular biologists, genomicists and bioinformaticians engaging in collaborative research across UCSF campuses. At the Genomics CoLab, we emphasize in the development of novel genomic approaches and providing advanced genomic and bioinformatic resources for investigators who wish to integrate modern genomic approaches into biological research. These approaches include bulk- and single-cell RNA-seq, small RNA-Seq, ChIP-Seq, ATAC-seq and whole exome/genome sequencing. We are also actively working on integrating novel genomic methods such as combinatorial genomic methods, special transcriptomics, and new epigenomic approaches such as CUTu0026TAG.u003cbr/u003eu003cbr/u003eThe UCSF Liver Center is a community of more than 50 investigators whose research is dedicated to understanding the liver. Liver Center members’ research encompasses numerous themes, ranging from basic developmental biology to disease outcome following treatment interventions. The mission of the Liver Center is to accelerate the research of its members by offering core services, such as bioinformatics. The scientific, technological and clinical advances enabled by the Liver Center support its vision to understand and cure of human liver diseases.u003cbr/u003e u003cbr/u003eABOUT UCSF u003cbr/u003eThe University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care. It is the only campus in the 10-campus UC system dedicated exclusively to the health sciences.,VerityZone:jobdescription,QuestionType:textarea,ActualValueFromSolar:null},{QuestionName:Organization,AnswerValue:Campus,VerityZone:location,QuestionType:select,ActualValueFromSolar:null},{QuestionName:Req Number,AnswerValue:55442BR,VerityZone:autoreq,QuestionType:text,ActualValueFromSolar:null},{QuestionName:Location,AnswerValue:Mission Bay and Parnassus,VerityZone:formtext8,QuestionType:single-select,ActualValueFromSolar:null},{QuestionName:Job Title,AnswerValue:Bioinformatics Scientist,VerityZone:formtext10,QuestionType:text,ActualValueFromSolar:null},{QuestionName:Appointment Type,AnswerValue:Career,VerityZone:formtext12,QuestionType:radio,ActualValueFromSolar:null},{QuestionName:Percentage,AnswerValue:100%,VerityZone:formtext13,QuestionType:Text,ActualValueFromSolar:null},{QuestionName:Shift Length,AnswerValue:8 Hours ,VerityZone:formtext14,QuestionType:Radio,ActualValueFromSolar:null},{QuestionName:Shift,AnswerValue:Days,VerityZone:formtext15,QuestionType:Checkbox,ActualValueFromSolar:null},{QuestionName:Work Days,AnswerValue:Monday - Friday; ~9am - 5:30 pm,VerityZone:formtext16,QuestionType:Text,ActualValueFromSolar:null},{QuestionName:Required Qualifications,AnswerValue:•tBacheloru0027s degree in biological science, computational/programming, or related area and/or equivalent experience/trainingu003cbru003e•tBasic knowledge of bioinformatics methods and data structuresu003cbru003e•tBasic knowledge of modern biology and applicable field of researchu003cbru003e•tBasic understanding of molecular genetic principlesu003cbru003e•tProficient in Python and/or Ru003cbru003e•tBasic project management skillsu003cbru003e•tAbility to communicate technical information in a clear and concise manneru003cbru003e•tSelf motivated, able to learn quickly, meet deadlines and demonstrate problem solving skillsu003cbru003e•tBasic consultation and strong communication skillsu003cbru003e•tStrong organizational and interpersonal skills for working in a multidiscipline and collaborative team,VerityZone:formtext3,QuestionType:textarea,ActualValueFromSolar:null},{QuestionName:Preferred Qualifications,AnswerValue:•tBasic knowledge of applications programming and web developmentu003cbru003e•tBasic knowledge of databasesu003cbru003e•tBasic knowledge of application and data security conceptsu003cbru003e•tWorking knowledge of next generation sequencing (NGS) methodologies and applicationsu003cbru003e•tPrevious exposure to Linux/Unix systemsu003cbru003e•tInterpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization,VerityZone:formtext4,QuestionType:textarea,ActualValueFromSolar:null},{QuestionName:License/Certification,AnswerValue:n/a,VerityZone:formtext5,QuestionType:textarea,ActualValueFromSolar:null},{QuestionName:Position Type,AnswerValue:Full Time,VerityZone:formtext6,QuestionType:radio,ActualValueFromSolar:null},{QuestionName:Department Name,AnswerValue:Medicine / SFGH / Division of Gastroenterology,VerityZone:formtext17,QuestionType:text,ActualValueFromSolar:null},{QuestionName:Equal Employment Opportunity,AnswerValue:The University of California San Francisco is an Equal Opportunity/Affirmative Action Employer. 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